This sounds like a major clusterfuck. You should've been able to run the car using OBD1 with all the stock sensors by just extending a few wires. I wouldn't even bother with COP swap, there is no benefit in it unless you swap to 98+ OBD2 with a PCM that can control it.
I swapped to 03' harness and PCM in my box when I did 5.4 swap. It was a bit of a pain but not too bad.
I swapped to 03' harness and PCM in my box when I did 5.4 swap. It was a bit of a pain but not too bad.
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